PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52192.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 558aa    MW: 59003.1 Da    PI: 4.3864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52192.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13295338755
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +ErrRR+++N+++ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  MLOC_52192.1 295 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 338
                   58*********************7.....7***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-18286351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-14286349No hitNo description
PROSITE profilePS5088815.974288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-16294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17295349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10295338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGGGGDYHQQ SIIGGAAAHG HGGGGGAAVE AALRPLVGGS HGWDYCIYWR LSPDQRFLEM  60
TGFCCSAEFE AEVAALGETP ATIPLDSSSI GMHAQALLSN QPIWQSSGGA PGPDLLTGYE  120
AASNGGEKTR LLVPVAGGIV ELFASRYMAE EQQMAELVMA QCGGGGQAWQ ETEPQGFAWD  180
AAAAADPGRL YAAASLNLFD GAGGSGSGEP FLAGVQEDGG AGLGWQYAAE SSEPPSTVQA  240
QEYQQVHGSG VGRADSGSEG SDMQLGDPDD DGDGETQRGS GKDGGGKRQQ CKNLVAERRR  300
RKKLNDRLYK LRSLVPNITK MDRASILGDA IDYIVGLQKQ VKDLQDELED PNPAGGAGGD  360
SKAPDVLLDD HPPPGLDNDE DSPQQQPFPS AGGKRARKEE AGDEEEKEAE DQDMEPQVEV  420
RQVEGKEFFL QVLCSHKSGR FVRIMDEIAA LGLQITSINV TSYNKLVLNV FRAVMKDNEA  480
AVPADRVRDS LLEVTREMYG GGGGWSSPLP QPPAPPTSAK LDGMDGQAVP AAAGDHYQLH  540
HQVLGGYHHQ HLQYLAMD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296303ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750740.0AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233727.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_010233729.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
SwissprotQ6YUS31e-175TDR_ORYSJ; Transcription factor TDR
TrEMBLM0WJU50.0M0WJU5_HORVD; Uncharacterized protein
STRINGMLOC_52192.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-46bHLH family protein