![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_52192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 558aa MW: 59003.1 Da PI: 4.3864 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.2e-13 | 295 | 338 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq MLOC_52192.1 295 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 338 58*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.89E-18 | 286 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.73E-14 | 286 | 349 | No hit | No description |
PROSITE profile | PS50888 | 15.974 | 288 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-16 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-17 | 295 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 295 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 558 aa Download sequence Send to blast |
MGGGGDYHQQ SIIGGAAAHG HGGGGGAAVE AALRPLVGGS HGWDYCIYWR LSPDQRFLEM 60 TGFCCSAEFE AEVAALGETP ATIPLDSSSI GMHAQALLSN QPIWQSSGGA PGPDLLTGYE 120 AASNGGEKTR LLVPVAGGIV ELFASRYMAE EQQMAELVMA QCGGGGQAWQ ETEPQGFAWD 180 AAAAADPGRL YAAASLNLFD GAGGSGSGEP FLAGVQEDGG AGLGWQYAAE SSEPPSTVQA 240 QEYQQVHGSG VGRADSGSEG SDMQLGDPDD DGDGETQRGS GKDGGGKRQQ CKNLVAERRR 300 RKKLNDRLYK LRSLVPNITK MDRASILGDA IDYIVGLQKQ VKDLQDELED PNPAGGAGGD 360 SKAPDVLLDD HPPPGLDNDE DSPQQQPFPS AGGKRARKEE AGDEEEKEAE DQDMEPQVEV 420 RQVEGKEFFL QVLCSHKSGR FVRIMDEIAA LGLQITSINV TSYNKLVLNV FRAVMKDNEA 480 AVPADRVRDS LLEVTREMYG GGGGWSSPLP QPPAPPTSAK LDGMDGQAVP AAAGDHYQLH 540 HQVLGGYHHQ HLQYLAMD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 296 | 303 | ERRRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK375074 | 0.0 | AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010233727.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Refseq | XP_010233729.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Swissprot | Q6YUS3 | 1e-175 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | M0WJU5 | 0.0 | M0WJU5_HORVD; Uncharacterized protein | ||||
STRING | MLOC_52192.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5530 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16910.1 | 3e-46 | bHLH family protein |